BayesSpace
Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments
Posts by Collection
portfolio
Gene knockouts affect salmonella abundance
Quantifying differences in bacterial abundance using mixed models
publications
Meta-analyses on prevalence of selected Parkinson’s nonmotor symptoms before and after diagnosis
Published in Translational Neurodegeneration, 2015
Recommended citation: Chen, Honglei, Edward J. Zhao, Wen Zhang, Yi Lu, Rui Liu, Xuemei Huang, Anna J. Ciesielski-Jones, Michele A. Justice, Deborah S. Cousins, Shyamal Peddada. (2015). "Meta-analyses on prevalence of selected Parkinson’s nonmotor symptoms before and after diagnosis." Transl. Neurodegener. 4(1). https://doi.org/10.1186/2047-9158-4-1
Factors associated with exacerbations among adults with asthma according to electronic health record data
Published in Asthma Research and Practice, 2019
Recommended citation: Greenblatt, Rebecca E., Edward J. Zhao, Sarah E. Henrickson, Andrea J. Apter, Rebecca A. Hubbard, Blanca E. Himes. (2019). "Factors associated with exacerbations among adults with asthma according to electronic health record data." Asthma Res. Pract. 5(1). https://doi.org/10.1186/s40733-019-0048-y
Aggregating transcript-level analyses for single-cell differential gene expression
Published in Nature Methods, 2020
Recommended citation: Becht, Etienne, Edward Zhao, Robert Amezquita, Raphael Gottardo. (2020). "Aggregating transcript-level analyses for single-cell differential gene expression." Nat. Methods. 17(6). https://doi.org/10.1038/s41592-020-0854-4
Salmonella enterica infection of murine and human enteroid-derived monolayers elicits differential activation of epithelium-intrinsic inflammasomes
Published in Infection and Immunity, 2020
Recommended citation: Holly, Mayumi K., Xiao Han, Edward J. Zhao, Shauna M. Crowley, Joannie M. Allaire, Leigh A. Knodler, Bruce A. Vallance, Jason G. Smith. (2020). "Salmonella enterica infection of murine and human enteroid-derived monolayers elicits differential activation of epithelium-intrinsic inflammasomes." Infect. Immun. 88(7). https://doi.org/10.1128/iai.00017-20
Spatial transcriptomics at subspot resolution with BayesSpace
Published in Nature Biotechnology, 2021
Recommended citation: Zhao, Edward, Matthew R. Stone, Xing Ren, Jamie Guenthoer, Kimberly S. Smythe, Thomas Pulliam, Stephen R. Williams, Cedric R. Uytingco, Sarah E. B. Taylor, Paul Nghiem, Jason H. Bielas, Raphael Gottardo. (2021). "Spatial transcriptomics at subspot resolution with BayesSpace." Nat. Biotechnol. 39(11). https://doi.org/10.1038/s41587-021-00935-2
Insitutype: likelihood-based cell typing for single cell spatial transcriptomics
Published in bioRxiv, 2022
Recommended citation: Danaher, Patrick, Edward Zhao, Zhi Yang, David Ross, Mark Gregory, Zach Reitz, Tae K. Kim, Sarah Baxter, Shaun Jackson, Shanshan He, Dave Henderson, Joseph M. Beechem. (2022). "Insitutype: likelihood-based cell typing for single cell spatial transcriptomics." bioRxiv. https://doi.org/10.1101/2022.10.19.512902
talks
Talk 1 on Relevant Topic in Your Field
Published:
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Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
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teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
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Teaching experience 2
Workshop, University 1, Department, 2015
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