Create minimal SingleCellExperiment
for documentation examples.
exampleSCE(nrow = 8, ncol = 12, n_genes = 100, n_PCs = 10)
nrow | Number of rows of spots |
---|---|
ncol | Number of columns of spots |
n_genes | Number of genes to simulate |
n_PCs | Number of principal components to include |
A SingleCellExperiment object with simulated counts, corresponding
logcounts and PCs, and positional data in colData
. Spots are
distributed over an (nrow
x ncol
) rectangle.
Inspired by scuttle's mockSCE()
.