Download a processed sample from our S3 bucket

Source: R/utils.R

Datasets are cached locally using BiocFileCache. The first time using this function, you may need to consent to creating a BiocFileCache directory if one does not already exist.

getRDS(dataset, sample, cache = TRUE)

Arguments

dataset

Dataset identifier
sample

Sample identifier
cache

If true, cache the dataset locally with BiocFileCache. Otherwise, download directly from our S3 bucket. Caching saves time on subsequent loads, but consumes disk space.

Value

sce A SingleCellExperiment with positional information in colData and PCs based on the top 2000 HVGs

Examples

sce <- getRDS("2018_thrane_melanoma", "ST_mel1_rep2", cache=FALSE)