Plot spatial cluster assignments.

clusterPlot(
  sce,
  label = "spatial.cluster",
  palette = NULL,
  color = NULL,
  platform = NULL,
  is.enhanced = NULL,
  ...
)

Arguments

sce	SingleCellExperiment. If `fill` is specified and is a string, it must exist as a column in `colData(sce)`.
label	Labels used to color each spot. May be the name of a column in `colData(sce)`, or a vector of discrete values.
palette	Optional vector of hex codes to use for discrete spot values.
color	Optional hex code to set color of borders around spots. Set to `NA` to remove borders.
platform	Spatial sequencing platform. If "Visium", the hex spot layout will be used, otherwise square spots will be plotted. NOTE: specifying this argument is only necessary if `sce` was not created by `spatialCluster()` or `spatialEnhance()`.
is.enhanced	True if `sce` contains subspot-level data instead of spots. Spatial sequencing platform. If true, the respective subspot lattice for each platform will be plotted. NOTE: specifying this argument is only necessary if `sce` was not created by `spatialCluster()` or `spatialEnhance()`.
...	Additional arguments for `geom_polygon()`. `size`, to specify the linewidth of these borders, is likely the most useful.

Returns a ggplot object.

sce <- exampleSCE()
clusterPlot(sce)